PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G188400.1.p
Common NameGLYMA_01G188400, LOC100801975
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 503aa    MW: 55637.5 Da    PI: 8.1779
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G188400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.4e-17149198155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Glyma.01G188400.1.p 149 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 198
                          78*******************......55************************997 PP

2AP243.86.3e-14241291155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  Glyma.01G188400.1.p 241 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 291
                          89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-16149207IPR016177DNA-binding domain
PfamPF008475.8E-9149198IPR001471AP2/ERF domain
CDDcd000182.31E-11150207No hitNo description
Gene3DG3DSA:3.30.730.105.5E-17150206IPR001471AP2/ERF domain
PROSITE profilePS5103217.596150206IPR001471AP2/ERF domain
SMARTSM003807.9E-32150212IPR001471AP2/ERF domain
CDDcd000182.82E-25241301No hitNo description
PfamPF008471.3E-9241291IPR001471AP2/ERF domain
SuperFamilySSF541715.82E-17241301IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-16242299IPR001471AP2/ERF domain
PROSITE profilePS5103215.461242299IPR001471AP2/ERF domain
SMARTSM003803.4E-31242305IPR001471AP2/ERF domain
PRINTSPR003674.7E-6243254IPR001471AP2/ERF domain
PRINTSPR003674.7E-6281301IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MWDLNDSPDQ RKDYESEGCS SSLYDDKGKR VASVSNSSSS AVVVEDGSEE EDSERGGSRT  60
LDNKKTNKIF GFSVAHDDSD HPPVTHQFFP VEDSELPVTA AAAAAGSSFP RAHWVGVKFC  120
QSETPGAGKA VKVSEPMKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD  180
TAHAAARAYD RAAIKFRGVE ADINFNIEDY EEDLKQMTNL TKEEFVHVLR RQSTGFPRGS  240
SKYRGVTLHK CGRWEARMGQ FLGKKYVYLG LFDTEIEAAR AYDKAAIKCN GKEAVTNFDP  300
SIYDGELNSE SSGGVAADHN LDLSLGNLIS KHSNSQSSRN HFPNSATDQH MPPESNWQSG  360
GSKPKVHLVN ILPKPCGRSN MEAYGQGESE TLRLLSQTHL QSPTTKEMHR YGPYRSPAEP  420
QMPHNFAHHL HQPSFHVPSS SSNRGRIGSD LSLSMSDQQQ WQQAGPPHLL ATAAASSGFP  480
QQIRPSQGWL QKNGFHSLMR PS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.227460.0cotyledon| flower| hypocotyl| leaf| root| seed coat| somatic embryo| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1708600.0AC170860.16 Glycine max cultivar Williams 82 clone gmw1-57d24, complete sequence.
GenBankKF2208340.0KF220834.1 Glycine max cultivar Williams 82K clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds.
GenBankKF2208350.0KF220835.1 Glycine max cultivar Sowon clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds.
GenBankKF2208360.0KF220836.1 Glycine max cultivar Pureun clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds.
GenBankKF2208370.0KF220837.1 Glycine max cultivar Kwangkyo clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds.
GenBankKF2208380.0KF220838.1 Glycine max cultivar Ilpumgeomjeong clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds.
GenBankKF2208390.0KF220839.1 Glycine max cultivar Seoritae clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds.
GenBankKF2208400.0KF220840.1 Glycine max cultivar PI96983 clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds.
GenBankKF2208410.0KF220841.1 Glycine max cultivar Haman clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds.
GenBankKF2208430.0KF220843.1 Glycine max cultivar Hwangkeum clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds.
GenBankKF2208440.0KF220844.1 Glycine soja cultivar IT162825 clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds.
GenBankKF2208450.0KF220845.1 Glycine soja cultivar IT178480 clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds.
GenBankKF2208460.0KF220846.1 Glycine soja cultivar IT182869 clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds.
GenBankKF2208480.0KF220848.1 Glycine soja cultivar IT182848 clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds.
GenBankKF2208490.0KF220849.1 Glycine soja cultivar IT182932 clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006573642.10.0PREDICTED: floral homeotic protein APETALA 2-like isoform X1
SwissprotP479271e-138AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLK7K4M60.0K7K4M6_SOYBN; Uncharacterized protein
STRINGGLYMA01G39520.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37843463
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-128AP2 family protein